Browse of TCMCG021C07638 protein

CDS

Accession Number	TCMCG021C07638
gbkey	CDS
Protein Id	XP_010914816.1
Location	join(64868621..64868632,64868731..64868847,64869077..64869135,64869261..64869320,64869433..64869486,64869583..64869631,64869737..64869784,64870907..64870972,64871296..64871346,64871426..64871545,64871619..64871703,64872514..64872595,64874996..64875104,64875195..64875251,64875342..64875388,64875466..64875520,64878564..64878635)
Gene	LOC105040125
GeneID	105040125
Organism	Elaeis guineensis

Protein

Length	380aa
Molecule type	protein
Topology	linear
Data_file_division	PLN
dblink	BioProject:PRJNA268357
db_source	XM_010916514.2
Definition	flap endonuclease 1 isoform X2 [Elaeis guineensis]

EGGNOG-MAPPER Annotation

COG_category	L
Description	Structure-specific nuclease with 5'-flap endonuclease and 5'-3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic apyrimidinic (AP) site-terminated flap. Acts as a genome stabilization factor that prevents flaps from equilibrating into structurs that lead to duplications and deletions. Also possesses 5'-3' exonuclease activity on nicked or gapped double- stranded DNA, and exhibits RNase H activity. Also involved in replication and repair of rDNA and in repairing mitochondrial DNA
KEGG_TC	-
KEGG_Module	-
KEGG_Reaction	-
KEGG_rclass	-
BRITE	ko00000        [VIEW IN KEGG] ko00001        [VIEW IN KEGG] ko01000        [VIEW IN KEGG] ko03032        [VIEW IN KEGG] ko03400        [VIEW IN KEGG] ko04147        [VIEW IN KEGG]
KEGG_ko	ko:K04799        [VIEW IN KEGG]
EC	-
KEGG_Pathway	ko03030        [VIEW IN KEGG] ko03410        [VIEW IN KEGG] ko03450        [VIEW IN KEGG] map03030        [VIEW IN KEGG] map03410        [VIEW IN KEGG] map03450        [VIEW IN KEGG]
GOs	GO:0005575        [VIEW IN EMBL-EBI] GO:0005622        [VIEW IN EMBL-EBI] GO:0005623        [VIEW IN EMBL-EBI] GO:0005634        [VIEW IN EMBL-EBI] GO:0005730        [VIEW IN EMBL-EBI] GO:0031974        [VIEW IN EMBL-EBI] GO:0031981        [VIEW IN EMBL-EBI] GO:0043226        [VIEW IN EMBL-EBI] GO:0043227        [VIEW IN EMBL-EBI] GO:0043228        [VIEW IN EMBL-EBI] GO:0043229        [VIEW IN EMBL-EBI] GO:0043231        [VIEW IN EMBL-EBI] GO:0043232        [VIEW IN EMBL-EBI] GO:0043233        [VIEW IN EMBL-EBI] GO:0044422        [VIEW IN EMBL-EBI] GO:0044424        [VIEW IN EMBL-EBI] GO:0044428        [VIEW IN EMBL-EBI] GO:0044446        [VIEW IN EMBL-EBI] GO:0044464        [VIEW IN EMBL-EBI] GO:0070013        [VIEW IN EMBL-EBI]

Sequence

CDS:   ATGGGCATAAAGGGTTTAACGAAGCTTCTCGCCGACAACGCTCCCAGGGCCATGAAGGAGCAAAAGTTTGAGAGCTATTTCGGCAGGAAGATTGCCATCGACGCCAGCATGAGCATCTACCAGTTCCTCATTGTTGTGGGAAGGACGGGAATGGAAACCCTCACCAATGACGCTGGTGAAGTCACGAGTCACTTGCAAGGGATGTTCAACCGGACAATAAGATTGCTCGAGGCCGGAATAAAGCCAGTATATGTTTTTGATGGTCAGCCACCAGATTTGAAGAAACAAGAGCTTGCAAAGAGGTTCTCGAAAAGGGAGGATGCCACCAAGGATTTGAGTACAGCAATAGAGGCTGGAGATAAAGAGGGTATTGAAAAGTTCAGCAAAAGGACTGTAAAGGTTACAAAGCAACACAATGAAGACTGTAAACGACTTCTAAGATTGATGGGTGTGCCTGTGATTGAGGCACCTTCTGAAGCAGAAGCAGAGTGTGCTGCACTTTGCAAAAGTGATAAGGTGTATGCTGTGGCATCCGAGGATATGGATTCACTAACTTTTGGGGCACCAAGGTTTCTTCGCCACTTAATGGATCCAAGCTTCAAAAAAATCCCTGTGATGGAATTTGAAGTCTCAAAGGTGCTGGAGGAGCTAGAGCTCACCATGGACCAATTCATCGATTTGTGCATTCTTTGTGGATGCGACTACTGTGATAGTATCAAAGGTATTGGGGGACAAACAGCTTTGAAGCTTATCTGTAAGCATGGTTGCATAGAAAACATATTGGAGAACATAAACAAAGAAAGGTATCAAATACCTGAGGACTGGCCATATCAAGAAGCTCGGCACCTGTTTAAAGAACCTATTGTGTCTCAAGAATTTCCAGAGCTCAAGTGGACTGCTCCAGATGAGGAGGGCCTTGTGGACTTTCTGGTGAAAGACAATGGTTTCAACCATGATCGAGTAACAAAGGCAATAGAAAAGATTAAAGCAGCAAAGAATAAATCCTCCCAAGGGCGACTGGAATCCTTTTTTAAGCCAGTAGTGAGTGCATCCGTGCCTCTTAAACGGAAGGAAACACCAGACAAGCTAGCAAAGGAAACAACAAACAAGAAGTCTAAGTCTAGAGGTGGGAAGAAAAAATAG

Protein:   MGIKGLTKLLADNAPRAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGMETLTNDAGEVTSHLQGMFNRTIRLLEAGIKPVYVFDGQPPDLKKQELAKRFSKREDATKDLSTAIEAGDKEGIEKFSKRTVKVTKQHNEDCKRLLRLMGVPVIEAPSEAEAECAALCKSDKVYAVASEDMDSLTFGAPRFLRHLMDPSFKKIPVMEFEVSKVLEELELTMDQFIDLCILCGCDYCDSIKGIGGQTALKLICKHGCIENILENINKERYQIPEDWPYQEARHLFKEPIVSQEFPELKWTAPDEEGLVDFLVKDNGFNHDRVTKAIEKIKAAKNKSSQGRLESFFKPVVSASVPLKRKETPDKLAKETTNKKSKSRGGKKK